The SBML Test Suite Database publicizes software systems' support of
SBML as determined by their performance on the SBML Test Suite. As a user
of SBML and SBML software, you can use this SBML Test Suite Database to
find the test results for different software systems. If you are a
developer of SBML Software you can also submit results to this database
and thereby make them known to the world.
The following is a list of the test cases in the SBML Test Suite. Click
on the name of a test to see more information about it and a list of the
software tools known in this database to pass that particular test. You
can also use the Filter button to focus the list of cases below on
a narrower subset.
Name
|
Component tags
|
Test tags
|
Brief summary of model
|
01187
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MinimizeObjective,
|
Minimize single objective function, hard bounds.
|
01189
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MinimizeObjective,
|
Minimize single objective function, infinite bounds.
|
01191
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
fbc:MinimizeObjective,
|
Multiple objectives defined, optimize active one (maximize)
|
01607
|
Compartment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:MinimizeObjective,
|
Minimize single objective function, hard bounds.
|
01609
|
Compartment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:MinimizeObjective,
|
Minimize single objective function, infinite bounds.
|
01611
|
Compartment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:MaximizeObjective,
fbc:MinimizeObjective,
|
Multiple objectives defined, optimize active one (maximize)
|
01618
|
Compartment,
InitialAssignment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
InitialValueReassigned,
NonUnityStoichiometry,
fbc:MinimizeObjective,
fbc:NonStrict,
|
FBC with initial assignment.
|
01620
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
InitialValueReassigned,
NonUnityStoichiometry,
fbc:MinimizeObjective,
fbc:NonStrict,
|
FBC with constant assignment rule to flux bound.
|
01622
|
Compartment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:MaximizeObjective,
fbc:MinimizeObjective,
|
FBC test with negative stoichiometries
|
01623
|
Compartment,
InitialAssignment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
AssignedConstantStoichiometry,
BoundaryCondition,
InitialValueReassigned,
NonUnityStoichiometry,
fbc:MinimizeObjective,
fbc:NonStrict,
|
FBC test with initial assignment to stoichiometry.
|
01624
|
Compartment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:MinimizeObjective,
|
FBC minimization test with a flux set to equal a particular value.
|
01625
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundEqual,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MinimizeObjective,
|
FBC minimization test with a flux set to equal a particular value.
|
01628
|
Compartment,
InitialAssignment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
AssignedConstantStoichiometry,
BoundaryCondition,
InitialValueReassigned,
NoMathML,
NonUnityStoichiometry,
fbc:MinimizeObjective,
fbc:NonStrict,
|
FBC test with initial assignment with no MathML to a stoichiometry.
|
01630
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
InitialValueReassigned,
NoMathML,
NonUnityStoichiometry,
fbc:MinimizeObjective,
fbc:NonStrict,
|
FBC with empty assignment rule to flux bound.
|