The SBML Test Suite Database publicizes software systems' support of
SBML as determined by their performance on the SBML Test Suite. As a user
of SBML and SBML software, you can use this SBML Test Suite Database to
find the test results for different software systems. If you are a
developer of SBML Software you can also submit results to this database
and thereby make them known to the world.
The following is a list of the test cases in the SBML Test Suite. Click
on the name of a test to see more information about it and a list of the
software tools known in this database to pass that particular test. You
can also use the Filter button to focus the list of cases below on
a narrower subset.
Name
|
Component tags
|
Test tags
|
Brief summary of model
|
01181
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:Submodel,
|
Amount,
HasOnlySubstanceUnits,
InitialValueReassigned,
comp:ExtentConversionFactor,
comp:SubmodelOutput,
comp:TimeConversionFactor,
|
A hierarchical model with extent and time conversion and a reference to a modified reaction.
|
01182
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
HasOnlySubstanceUnits,
InitialValueReassigned,
MultiCompartment,
comp:ExtentConversionFactor,
comp:SubmodelOutput,
comp:TimeConversionFactor,
|
A hierarchical model with time and extent conversion and a reference to a modified replaced reaction.
|
01183
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
HasOnlySubstanceUnits,
InitialValueReassigned,
MultiCompartment,
comp:ConversionFactor,
comp:ExtentConversionFactor,
comp:SubmodelOutput,
comp:TimeConversionFactor,
|
A hierarchical model with time and extent conversion and a reference to a modified replaced reaction, itself with a conversion factor.
|
01184
|
Compartment,
InitialAssignment,
Parameter,
Reaction,
Species,
|
Amount,
InitialValueReassigned,
|
A kinetic law set by a constant with an initial assignment.
|
01185
|
Compartment,
InitialAssignment,
Parameter,
Reaction,
Species,
|
Amount,
InitialValueReassigned,
|
A kinetic law set by a constant with an initial assignment.
|
01186
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Maximize single objective function, hard bounds.
|
01187
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MinimizeObjective,
|
Minimize single objective function, hard bounds.
|
01188
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Maximize single objective function, infinite bounds.
|
01189
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MinimizeObjective,
|
Minimize single objective function, infinite bounds.
|
01190
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Maximize single objective function, non-unitary objective flux coefficient
|
01191
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
fbc:MinimizeObjective,
|
Multiple objectives defined, optimize active one (maximize)
|
01192
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Single objective, multiple flux objectives
|
01193
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Single objective, test R07 GE 0.5, R10 GE 0.5
|
01194
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Single objective, test R07 LE 0.2, R10 LE 0.3
|
01195
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundEqual,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Single objective, test: R07 EQ 0.2, R10 EQ 0.2, R25 EQ 0.6
|
01196
|
Compartment,
Reaction,
Species,
fbc:FluxBound,
fbc:FluxObjective,
fbc:Objective,
|
BoundaryCondition,
NonUnityStoichiometry,
fbc:BoundGreaterEqual,
fbc:BoundLessEqual,
fbc:MaximizeObjective,
|
Infeasible solution, should return a nan
|
01197
|
Compartment,
|
NonUnityCompartment,
|
Compartment with spatial dimensions of 7.
|
01198
|
AssignmentRule,
Compartment,
Parameter,
RateRule,
Species,
|
Amount,
BoundaryCondition,
InitialValueReassigned,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
VolumeConcentrationRates,
|
A species and a compartment both under control of a rate rule.
|
01199
|
AssignmentRule,
Parameter,
RateRule,
|
InitialValueReassigned,
NonConstantParameter,
UncommonMathML,
|
Nested piecewise in conditional.
|
01200
|
AssignmentRule,
Parameter,
RateRule,
|
InitialValueReassigned,
NonConstantParameter,
UncommonMathML,
|
Nested piecewise in return.
|