The SBML Test Suite Database publicizes software systems' support of
SBML as determined by their performance on the SBML Test Suite. As a user
of SBML and SBML software, you can use this SBML Test Suite Database to
find the test results for different software systems. If you are a
developer of SBML Software you can also submit results to this database
and thereby make them known to the world.
The following is a list of the test cases in the SBML Test Suite. Click
on the name of a test to see more information about it and a list of the
software tools known in this database to pass that particular test. You
can also use the Filter button to focus the list of cases below on
a narrower subset.
Name
|
Component tags
|
Test tags
|
Brief summary of model
|
00972
|
Compartment,
EventNoDelay,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
NonUnityStoichiometry,
|
A very simple reaction with stoichiometry changed by an event.
|
00973
|
StoichiometryMath,
Compartment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
DefaultValue,
NonConstantParameter,
NonUnityStoichiometry,
|
A very simple reaction with stoichiometry changed by a rate rule.
|
00989
|
StoichiometryMath,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
DefaultValue,
HasOnlySubstanceUnits,
NonUnityStoichiometry,
|
A simple reaction with stoichiometry the same as its species. For convenience, another reaction is present with the same kinetics, as the species is used in the kinetic law instead.
|
00990
|
StoichiometryMath,
Compartment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
DefaultValue,
NonUnityStoichiometry,
NonConstantParameter,
|
A simple reaction with stoichiometry set to a parameter that varies due to a rate law.
|
00991
|
StoichiometryMath,
Compartment,
EventNoDelay,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
DefaultValue,
NonUnityStoichiometry,
NonConstantParameter,
|
A simple reaction with stoichiometry set to a parameter that varies from an Event.
|
00992
|
StoichiometryMath,
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
DefaultValue,
HasOnlySubstanceUnits,
InitialValueReassigned,
NonUnityStoichiometry,
NonConstantParameter,
|
A simple reaction with stoichiometry set to a parameter, which in turn is set to be the same as its species.
|
00993
|
StoichiometryMath,
AlgebraicRule,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
DefaultValue,
InitialValueReassigned,
NonConstantParameter,
NonUnityStoichiometry,
|
A simple reaction with stoichiometry set to a parameter, which in turn is set to be the same as its species via an algebraic rule.
|
00994
|
StoichiometryMath,
CSymbolTime,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
DefaultValue,
NonUnityStoichiometry,
|
A simple reaction with stoichiometry set to be equal to 'time'.
|
01000
|
AssignmentRule,
CSymbolAvogadro,
CSymbolTime,
Compartment,
EventNoDelay,
EventPriority,
EventWithDelay,
FunctionDefinition,
InitialAssignment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedConstantStoichiometry,
AssignedVariableStoichiometry,
BoundaryCondition,
ConstantSpecies,
ConversionFactors,
EventIsNotPersistent,
EventIsPersistent,
EventT0Firing,
EventUsesAssignmentTimeValues,
EventUsesTriggerTimeValues,
HasOnlySubstanceUnits,
InitialValueReassigned,
LocalParameters,
MultiCompartment,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
NonUnityStoichiometry,
ReversibleReaction,
SpeciesReferenceInMath,
|
A 'kitchen sink' model with 34 tags. Woo-hoo!
|
01103
|
Compartment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
NonUnityStoichiometry,
|
A very simple reaction with stoichiometry changed by a rate rule.
|
01104
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
InitialValueReassigned,
NonUnityStoichiometry,
HasOnlySubstanceUnits,
|
A simple reaction with stoichiometry the same as its species. For convenience, another reaction is present with the same kinetics, as the species is used in the kinetic law instead.
|
01105
|
AssignmentRule,
Compartment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
NonUnityStoichiometry,
NonConstantParameter,
InitialValueReassigned,
|
A simple reaction with stoichiometry set to a parameter that varies due to a rate law.
|
01106
|
AssignmentRule,
Compartment,
EventNoDelay,
Parameter,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
NonUnityStoichiometry,
NonConstantParameter,
InitialValueReassigned,
|
A simple reaction with stoichiometry set to a parameter that varies from an Event.
|
01107
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
|
InitialValueReassigned,
Amount,
AssignedVariableStoichiometry,
NonUnityStoichiometry,
NonConstantParameter,
HasOnlySubstanceUnits,
|
A simple reaction with stoichiometry set to a parameter, which in turn is set to be the same as its species.
|
01108
|
AlgebraicRule,
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
|
InitialValueReassigned,
Amount,
AssignedVariableStoichiometry,
InitialValueReassigned,
NonConstantParameter,
NonUnityStoichiometry,
|
A simple reaction with stoichiometry set to a parameter, which in turn is set to be the same as its species via an algebraic rule.
|
01109
|
AssignmentRule,
CSymbolTime,
Compartment,
Parameter,
Reaction,
Species,
|
InitialValueReassigned,
Amount,
AssignedVariableStoichiometry,
NonUnityStoichiometry,
|
A simple reaction with stoichiometry set to be equal to 'time'.
|
01121
|
AssignmentRule,
CSymbolAvogadro,
CSymbolTime,
Compartment,
FunctionDefinition,
InitialAssignment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedConstantStoichiometry,
AssignedVariableStoichiometry,
BoundaryCondition,
ConstantSpecies,
ConversionFactors,
HasOnlySubstanceUnits,
InitialValueReassigned,
LocalParameters,
MultiCompartment,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
NonUnityStoichiometry,
SpeciesReferenceInMath,
|
A combination test of almost everything but events.
|
01398
|
CSymbolTime,
Compartment,
EventNoDelay,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
FastReaction,
NonUnityStoichiometry,
|
A fast reaction with an assigned stoichiometry from an event
|
01419
|
AssignmentRule,
CSymbolDelay,
Compartment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
InitialValueReassigned,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
|
A delay function of a species reference.
|
01444
|
CSymbolTime,
Compartment,
EventNoDelay,
InitialAssignment,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
InitialValueReassigned,
NonUnityStoichiometry,
|
Multiple species references to the same species with assigned variable stoichiometries
|