The SBML Test Suite Database publicizes software systems' support of
SBML as determined by their performance on the SBML Test Suite. As a user
of SBML and SBML software, you can use this SBML Test Suite Database to
find the test results for different software systems. If you are a
developer of SBML Software you can also submit results to this database
and thereby make them known to the world.
The following is a list of the test cases in the SBML Test Suite. Click
on the name of a test to see more information about it and a list of the
software tools known in this database to pass that particular test. You
can also use the Filter button to focus the list of cases below on
a narrower subset.
Name
|
Component tags
|
Test tags
|
Brief summary of model
|
00974
|
AssignmentRule,
Compartment,
InitialAssignment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
InitialValueReassigned,
NonConstantParameter,
SpeciesReferenceInMath,
|
A very simple reaction whose stoichiometry is referenced in other math.
|
01000
|
AssignmentRule,
CSymbolAvogadro,
CSymbolTime,
Compartment,
EventNoDelay,
EventPriority,
EventWithDelay,
FunctionDefinition,
InitialAssignment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedConstantStoichiometry,
AssignedVariableStoichiometry,
BoundaryCondition,
ConstantSpecies,
ConversionFactors,
EventIsNotPersistent,
EventIsPersistent,
EventT0Firing,
EventUsesAssignmentTimeValues,
EventUsesTriggerTimeValues,
HasOnlySubstanceUnits,
InitialValueReassigned,
LocalParameters,
MultiCompartment,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
NonUnityStoichiometry,
ReversibleReaction,
SpeciesReferenceInMath,
|
A 'kitchen sink' model with 34 tags. Woo-hoo!
|
01121
|
AssignmentRule,
CSymbolAvogadro,
CSymbolTime,
Compartment,
FunctionDefinition,
InitialAssignment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedConstantStoichiometry,
AssignedVariableStoichiometry,
BoundaryCondition,
ConstantSpecies,
ConversionFactors,
HasOnlySubstanceUnits,
InitialValueReassigned,
LocalParameters,
MultiCompartment,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
NonUnityStoichiometry,
SpeciesReferenceInMath,
|
A combination test of almost everything but events.
|
01380
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
InitialValueReassigned,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in an assignment rule.
|
01381
|
Compartment,
InitialAssignment,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
InitialValueReassigned,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in an initial assignment.
|
01382
|
CSymbolTime,
Compartment,
EventNoDelay,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in an event trigger.
|
01383
|
CSymbolTime,
Compartment,
EventNoDelay,
EventPriority,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in am event priority.
|
01384
|
CSymbolTime,
Compartment,
EventNoDelay,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in an event assignment.
|
01385
|
CSymbolTime,
Compartment,
EventWithDelay,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in an event delay.
|
01386
|
AlgebraicRule,
Compartment,
Parameter,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
InitialValueReassigned,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in an algebraic rule.
|
01387
|
Compartment,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference (itself in a replaced reaction) whose ID is used in a reaction.
|
01388
|
Compartment,
Parameter,
RateRule,
Reaction,
Species,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
Amount,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
comp:SubmodelOutput,
|
A replaced species reference whose ID is used in a rate rule.
|
01417
|
AssignmentRule,
CSymbolDelay,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
InitialValueReassigned,
NonConstantParameter,
SpeciesReferenceInMath,
|
A delay function that uses a species reference as an argument.
|
01418
|
AssignmentRule,
CSymbolDelay,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
InitialValueReassigned,
SpeciesReferenceInMath,
|
A delay function of a species reference.
|
01419
|
AssignmentRule,
CSymbolDelay,
Compartment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedVariableStoichiometry,
InitialValueReassigned,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
|
A delay function of a species reference.
|
01498
|
AssignmentRule,
Compartment,
InitialAssignment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedConstantStoichiometry,
BoundaryCondition,
InitialValueReassigned,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
NonUnityStoichiometry,
SpeciesReferenceInMath,
VolumeConcentrationRates,
|
A species and a compartment both under control of a rate rule.
|
01558
|
Compartment,
InitialAssignment,
Parameter,
Reaction,
Species,
|
Amount,
FastReaction,
InitialValueReassigned,
NonUnityStoichiometry,
SpeciesReferenceInMath,
|
A fast reaction with a species reference used in an initial assignment.
|
01559
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
FastReaction,
InitialValueReassigned,
NonUnityStoichiometry,
SpeciesReferenceInMath,
|
A fast reaction with a species reference used in an assignment rule.
|
01560
|
Compartment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
FastReaction,
NonConstantParameter,
NonUnityStoichiometry,
SpeciesReferenceInMath,
|
A fast reaction with a species reference used in a rate rule.
|
01566
|
AssignmentRule,
Compartment,
Parameter,
Reaction,
Species,
|
Amount,
InitialValueReassigned,
NonUnityStoichiometry,
SpeciesReferenceInMath,
UncommonMathML,
|
Uncommon MathML that uses species references.
|