The SBML Test Suite Database publicizes software systems' support of
SBML as determined by their performance on the SBML Test Suite. As a user
of SBML and SBML software, you can use this SBML Test Suite Database to
find the test results for different software systems. If you are a
developer of SBML Software you can also submit results to this database
and thereby make them known to the world.
The following is a list of the test cases in the SBML Test Suite. Click
on the name of a test to see more information about it and a list of the
software tools known in this database to pass that particular test. You
can also use the Filter button to focus the list of cases below on
a narrower subset.
Name
|
Component tags
|
Test tags
|
Brief summary of model
|
00456
|
Compartment,
Species,
Reaction,
Parameter,
EventWithDelay,
|
Amount,
EventUsesTriggerTimeValues,
|
Basic two reactions with three species in one compartment and one event that assigns value to two species, subject to a delay.
|
00457
|
Compartment,
Species,
Reaction,
Parameter,
EventWithDelay,
|
Amount,
EventUsesTriggerTimeValues,
|
Basic three reactions with three species in one compartment and one event that assigns value to two species, subject to a delay.
|
00458
|
Compartment,
Species,
Reaction,
Parameter,
EventWithDelay,
|
Amount,
EventUsesTriggerTimeValues,
|
Basic three reactions with three species in one compartment and one event that assigns value to three species, subject to a delay.
|
00459
|
Parameter,
RateRule,
EventWithDelay,
|
NonConstantParameter,
EventUsesTriggerTimeValues,
|
Model using parameters and rules only with and one event that assigns value to two parameters, subject to a delay.
|
00460
|
Parameter,
RateRule,
EventWithDelay,
|
NonConstantParameter,
EventUsesTriggerTimeValues,
|
Model using parameters and rules only with and one event that assigns value to two parameters, subject to a delay.
|
00461
|
Parameter,
RateRule,
EventWithDelay,
|
NonConstantParameter,
EventUsesTriggerTimeValues,
|
Model using parameters and rules only with and one event that assigns value to three parameters, subject to a delay.
|
00664
|
Compartment,
Species,
Reaction,
Parameter,
AlgebraicRule,
EventWithDelay,
|
Amount,
EventUsesTriggerTimeValues,
InitialValueReassigned,
|
Three reactions with four species in one compartment, with an algebraic rule used to determine value of a parameter.
|
00849
|
Compartment,
Species,
Reaction,
Parameter,
EventWithDelay,
|
Amount,
ReversibleReaction,
EventUsesTriggerTimeValues,
|
Two reversible reactions with four species in one compartment and one event that assigns value to two species subject to a delay.
|
00965
|
AssignmentRule,
CSymbolTime,
EventNoDelay,
EventPriority,
Parameter,
|
EventIsNotPersistent,
EventIsPersistent,
EventUsesTriggerTimeValues,
NonConstantParameter,
RandomEventExecution,
|
Competing events with the same priority, jointly causing a parameter to monotonically increase, checking to make sure one event doesn't happen too many times in a row. NOTE: STOCHASTIC TEST. This test is designed to fail only one time in a million, but it still may happen.
|
00966
|
AssignmentRule,
CSymbolTime,
EventNoDelay,
EventPriority,
FunctionDefinition,
Parameter,
|
EventIsNotPersistent,
EventIsPersistent,
EventUsesTriggerTimeValues,
NonConstantParameter,
RandomEventExecution,
|
Competing events with the same priority, jointly causing a parameter to monotonically increase, calculating a chi-squared statistic to ensure randomness. NOTE: STOCHASTIC TEST. This test is designed to fail with a frequency of 0.00002, but it still may happen.
|
00978
|
CSymbolTime,
EventNoDelay,
EventPriority,
Parameter,
|
EventIsNotPersistent,
EventIsPersistent,
EventUsesAssignmentTimeValues,
EventUsesTriggerTimeValues,
NonConstantParameter,
|
Several events conspire within the same time step to trigger three events multiple times, with different outcomes.
|
01000
|
AssignmentRule,
CSymbolAvogadro,
CSymbolTime,
Compartment,
EventNoDelay,
EventPriority,
EventWithDelay,
FunctionDefinition,
InitialAssignment,
Parameter,
RateRule,
Reaction,
Species,
|
Amount,
AssignedConstantStoichiometry,
AssignedVariableStoichiometry,
BoundaryCondition,
ConstantSpecies,
ConversionFactors,
EventIsNotPersistent,
EventIsPersistent,
EventT0Firing,
EventUsesAssignmentTimeValues,
EventUsesTriggerTimeValues,
HasOnlySubstanceUnits,
InitialValueReassigned,
LocalParameters,
MultiCompartment,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
NonUnityStoichiometry,
ReversibleReaction,
SpeciesReferenceInMath,
|
A 'kitchen sink' model with 34 tags. Woo-hoo!
|
01049
|
Compartment,
Species,
Reaction,
Parameter,
EventWithDelay,
|
Amount,
ReversibleReaction,
EventUsesTriggerTimeValues,
|
Two reversible reactions with four species in one compartment and one event that assigns value to two species subject to a delay.
|
01177
|
CSymbolTime,
EventWithDelay,
Parameter,
comp:ModelDefinition,
comp:ReplacedElement,
comp:Submodel,
|
EventUsesTriggerTimeValues,
NonConstantParameter,
comp:TimeConversionFactor,
|
A hierarchical model with a time conversion factor.
|
01324
|
EventWithDelay,
Parameter,
RateRule,
|
EventUsesTriggerTimeValues,
NonConstantParameter,
|
A delayed event using trigger-time values.
|
01326
|
Compartment,
EventWithDelay,
Parameter,
Reaction,
Species,
|
Amount,
EventUsesTriggerTimeValues,
NonConstantParameter,
|
A delayed event using trigger-time values.
|
01328
|
CSymbolTime,
EventNoDelay,
EventWithDelay,
Parameter,
|
EventUsesTriggerTimeValues,
NonConstantParameter,
|
A delayed event using trigger-time values.
|
01330
|
CSymbolTime,
EventNoDelay,
EventPriority,
Parameter,
|
EventUsesTriggerTimeValues,
NonConstantParameter,
|
A simultaneous event using trigger-time values.
|
01333
|
EventNoDelay,
EventPriority,
Parameter,
|
EventT0Firing,
EventUsesTriggerTimeValues,
NonConstantParameter,
|
Two events that fire at t0 with different priorities.
|
01508
|
AssignmentRule,
CSymbolTime,
Compartment,
EventWithDelay,
Parameter,
RateRule,
Species,
|
Amount,
BoundaryCondition,
EventUsesTriggerTimeValues,
InitialValueReassigned,
NonConstantCompartment,
NonConstantParameter,
NonUnityCompartment,
VolumeConcentrationRates,
|
A species and a compartment both under control of a rate rule, then modified by an event.
|